SymyxDraw 3.1 and InChIKeys:
In the new Symyx Draw 3.1, which can be dowloaded for free for non-commercial purpose from their website, there is a nice feature included, allowing WEB-searches directly from your drawing using the InChIKey.
In the menu 'Chemistry --> Inchi settings' you have a line named 'WebBrowserURL:'
the default value here is: http://www.google.com/search?q=%INCHI%
which performs a search using 'Google' as search engine for the variable '%INCHI%, which will be substituted by your actual string calculated from your drawing.
This command performs a search over all indexed webpages having this particular string, if you are more specifically interested in available NMR-data for your drawn molecule, simply replace the line by the following:
http://www.google.com/search?q=site:nmrpredict.orc.univie.ac.at+%INCHI%
This command performs a site-specific search over all my indexed INCHIKEY-pages, which link to the NMR-data ( follow the links to the supplier OR recall the data directly by clicking the 'WEBCSEARCH'-Logo - the NMRShiftDB data are already online, the other data are under installation).
Technical hint: I strongly recommend to click a 'Edit --> Select all' in order to force Symyx Draw to calculate the strings from your complete molecule - when you select only a part, only this part will be used to calculate the descriptors
Hope you enjoy ! Your feedback is highly appreciated !
Showing posts with label inchikey. Show all posts
Showing posts with label inchikey. Show all posts
Wednesday, December 3, 2008
Sunday, January 6, 2008
CSEARCH Data and InChIKeys
InChIKeys are an excellent tool for identical structure searches on the web using the usual search-engines like google, yahoo, msn, etc. The architecture of the InChIKeys allows searching for two-dimensional topologies when using only the first 14 characters, whereas using the full InChIKey allows the inclusion of all additional features like stereochemistry.
Within the CSEARCH-environment all structures have been converted into InChIKeys and together with my data-exchange protocols dating back into the late '80s a collection of links has been built. Each page summarizes for a specific two-dimensional molecular topology all systems, where the corresponding C13/O17/N15/F19/P31/B11/Si29-spectrum is available.
The following systems have indexed:
CSEARCH including upcoming data
SPECINFO
CHEMGATE
NMRPredict
NMRPredict ONLINE
KnowItAll
KnowItAll Anywhere
NMRShiftDB
University of Mainz, In-house database
A total number of nearly half a million spectra from approx. 350,000 different structures has been indexed in a systematic way. The pages have already been crawled by the most important search engines.
How to make use of this 'portal of existing NMR-spectral information' ?
Generate the InchiKey for your query structure, e.g. this is "ABCDEFGHIJKLMN-ABCDEFGHIJ"; now take the first 14 characters (before the hyphen!) and construct the follwoing URL:
http://nmrpredict.orc.univie.ac.at/inchikey/ABCDEFGHIJKLMN.html
Request the corresponding page; in case this particular 'structure family' (=two-dimensional molecular topology) has C/O/N/F/P/B/Si NMR-data available in one of the above listed systems, you will get a list of links to them. In case there is no NMR-spectral information available, your http-request will be answered by a 'Page not found (404)' - error.
Within the CSEARCH-environment all structures have been converted into InChIKeys and together with my data-exchange protocols dating back into the late '80s a collection of links has been built. Each page summarizes for a specific two-dimensional molecular topology all systems, where the corresponding C13/O17/N15/F19/P31/B11/Si29-spectrum is available.
The following systems have indexed:
CSEARCH including upcoming data
SPECINFO
CHEMGATE
NMRPredict
NMRPredict ONLINE
KnowItAll
KnowItAll Anywhere
NMRShiftDB
University of Mainz, In-house database
A total number of nearly half a million spectra from approx. 350,000 different structures has been indexed in a systematic way. The pages have already been crawled by the most important search engines.
How to make use of this 'portal of existing NMR-spectral information' ?
Generate the InchiKey for your query structure, e.g. this is "ABCDEFGHIJKLMN-ABCDEFGHIJ"; now take the first 14 characters (before the hyphen!) and construct the follwoing URL:
http://nmrpredict.orc.univie.ac.at/inchikey/ABCDEFGHIJKLMN.html
Request the corresponding page; in case this particular 'structure family' (=two-dimensional molecular topology) has C/O/N/F/P/B/Si NMR-data available in one of the above listed systems, you will get a list of links to them. In case there is no NMR-spectral information available, your http-request will be answered by a 'Page not found (404)' - error.
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